Mathematics, Simon Fraser University

419 11793Position ID: SFU-CANSSI [#11793]
Position Title: Post-Doctoral Fellow in Statistical Pathogens Genomics
Position Type: Postdoctoral
Position Location: Burnaby, British Columbia V5A 1S6, Canada [map]
Subject Area: Statistical Pathogens Genomics
Application Deadline: 2018/03/31 (posted 2018/03/07, listed until 2018/06/30)
Position Description:    

*** the list date or deadline for this position has passed, and no new applications will be accepted. ***

Pathogenic microbial organisms cause a significant burden of disease not only in low-resource countries, but also in high-income countries, especially in hospital settings. One challenge that is particularly relevant today is the problem of drug resistance, whereby a pathogen no longer responds to treatment by one or more available drugs. Additionally, the frequency of pathogen outbreaks requires the development of surveillance tools to rapidly track, prevent, and ultimately disrupt the chain of transmissions. The availability of fast, reliable and affordable whole-genome sequencing (WGS) methods has the potential to be a major boon for public health authorities attempting to control the development of drug resistance and the spread of epidemic outbreaks. However, in order to fully harness the power of these methods there is an urgent need for novel statistical and algorithmic techniques for microbial WGS data. These methods are still in their infancy, and developing them further could lead to a significant impact.

The successful applicant for this position will extend state-of-the-art computational statistics methodology to address key challenges from fields such as ​ pathogen genome-wide association studies; phylodynamics, for example methodological developments related to ​ Approximate Bayesian Computation (ABC) or ​ Sequential Monte Carlo (SMC)​; and ​ molecular epidemiology​. The specific focus will depend on the background of the successful candidate. The ideal candidate will have a PhD in computational biology, statistics, applied mathematics, or a related field. The candidate should be a self-starter, able to work independently and assist in supervising MSc or PhD students. Experience working with genomic data, and a knowledge of phylodynamics, GWAS, ABC and/or SMC methodologies is an asset.

The position will be based in Vancouver, BC, jointly hosted by Leonid Chindelevitch (Simon Fraser University, Computer Science Department) and Alexandre Bouchard-Côté (University of British Columbia, Statistics Department) and funded by a Collaborative Research Team Project from the Canadian Statistical Sciences Institute. The applicant will also have the opportunity to collaborate with researchers in the life sciences and clinical departments. The applicant will be expected to travel within Canada and internationally for collaboration and presentation of research results; our collaborators on this project are based in Montreal, Halifax, Toronto, Ottawa, London, and Boston, MA.

The position will come with a competitive postdoctoral-level compensation for one year, with possibility of extension. Applications will be considered on a rolling basis.

Application Materials Required:
Submit the following items online at this website to complete your application:
And anything else requested in the position description.

Further Info:
Simon Fraser University
Department of Mathematics
SCK 10512
8888 University Drive
Burnaby, BC V5A 1S6

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